STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_1518Homologs of previously reported genes of unknown function. (228 aa)    
Predicted Functional Partners:
PP_1519
Putative Lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.699
PP_2785
Homologs of previously reported genes of unknown function.
  
     0.526
plsB
Glycerol-3-phosphate acyltransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fattyacidandphospholipidmetabolism : Biosynthesis; Belongs to the GPAT/DAPAT family.
  
    0.505
PP_0287
Homologs of previously reported genes of unknown function.
 
    0.468
PP_0347
Homologs of previously reported genes of unknown function.
  
    0.462
PP_3475
Putative type II secretory pathway, pseudopilin pulG-related signal peptide protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure; Cellenvelope : Surface structures.
  
     0.430
PP_3026
Putative Phage recombinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.417
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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