Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_1526Putative Beta-(1-3)-glucosyl transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (863 aa)    
Predicted Functional Partners:
PP_1523
Homologs of previously reported genes of unknown function.
  
    0.713
rlmAA
23S rRNA m1G745 methyltransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Transcription : RNA processing.
       0.706
dapE
Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.
       0.706
tcdA
tRNA threonylcarbamoyladenosine dehydratase (t(6)A37 dehydratase); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Proteinsynthesis : tRNA and rRNA base modification.
       0.627
PP_0672
Sensory box protein.
  
  
 0.474
PP_1154
Sensory box protein.
  
  
 0.474
yegE
Diguanylate cyclase with phosphodiesterase domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Proteinfate : Protein modification and repair.
  
  
 0.474
PP_3711
Diguanylate cyclase; Function of strongly homologous gene; enzyme.
  
  
 0.474
PP_2028
Conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat; Homologs of previously reported genes of unknown function; Unknown function.
  
 
 0.458
PP_2447
Homologs of previously reported genes of unknown function.
  
 
 0.458
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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