STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_1532Putative Phage integrase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the 'phage' integrase family. (368 aa)    
Predicted Functional Partners:
PP_1563
Putative Phage terminase, large subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.916
PP_1584
Homologs of previously reported genes of unknown function.
   
  
 0.909
PP_2297
Putative integrative genetic element Ppu40, integrase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Mobileandextrachromosomalelementfunctions : Transposon functions; Belongs to the 'phage' integrase family.
      
 0.842
PP_2266
DNA-directed RNA polymerase, bacteriophage and mitochondrial type.
      
 0.840
PP_0352
RNA polymerase sigma-70 factor, ECF subfamily.
   
  
 0.837
PP_3698
Homologs of previously reported genes of unknown function.
      
 0.834
PP_5395
Homologs of previously reported genes of unknown function.
      
 0.834
PP_2431
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
      
 0.831
PP_1533
Putative Excisionase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.795
PP_2964
Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     
 0.746
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.