Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_1534Homologs of previously reported genes of unknown function. (105 aa)    
Predicted Functional Partners:
PP_1533
Putative Excisionase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.673
PP_1532
Putative Phage integrase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the 'phage' integrase family.
       0.668
PP_1535
Putative Methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.609
PP_1538
Homologs of previously reported genes of unknown function.
  
    0.600
PP_1537
Homologs of previously reported genes of unknown function.
  
    0.598
PP_1536
Homologs of previously reported genes of unknown function.
  
    0.586
PP_5472
Homologs of previously reported genes of unknown function; Unknown function.
       0.583
yffB
Putative glutathione-dependent thiol reductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknown function; Belongs to the ArsC family.
       0.506
PP_1539
Homologs of previously reported genes of unknown function; Unknown function.
  
    0.450
dapD
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA.
       0.449
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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