Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_1551Putative Phage replication protein O; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (284 aa)    
Predicted Functional Partners:
PP_1552
Putative Phage replication protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.789
PP_1554
Homologs of previously reported genes of unknown function.
  
    0.575
PP_1555
Putative Phage integrase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the 'phage' integrase family.
  
    0.564
PP_1553
Homologs of previously reported genes of unknown function.
       0.557
PP_1557
Homologs of previously reported genes of unknown function.
       0.551
PP_1556
Homologs of previously reported genes of unknown function.
  
    0.513
PP_1558
Homologs of previously reported genes of unknown function.
  
    0.510
PP_1550
Transcriptional regulator, Cro/CI family.
  
    0.486
birA
Bifunctional biotin-[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
       0.481
PP_1897
DNA internalization-related competence protein ComEC/Rec2.
       0.444
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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