STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_1552Putative Phage replication protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (234 aa)    
Predicted Functional Partners:
dnaB
Replicative DNA helicase (ATPase); Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
 
 
 0.922
dnaA
Chromosomal replication initiator protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids (By similarity).
    
 
 0.902
PP_1551
Putative Phage replication protein O; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.787
PP_1554
Homologs of previously reported genes of unknown function.
       0.787
PP_1553
Homologs of previously reported genes of unknown function.
  
    0.774
PP_3893
Putative Phage DNA helicase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.770
PP_1555
Putative Phage integrase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the 'phage' integrase family.
  
    0.763
PP_1556
Homologs of previously reported genes of unknown function.
  
    0.742
PP_1557
Homologs of previously reported genes of unknown function.
       0.737
PP_1558
Homologs of previously reported genes of unknown function.
  
    0.723
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.