PP_1558 protein (Pseudomonas putida KT2440) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PP_1558

Homologs of previously reported genes of unknown function. (113 aa)

Predicted Functional Partners:

PP_1555

0.780

PP_1557

0.780

PP_1556

0.757

PP_1554

0.736

PP_1553

0.732

PP_1552

0.721

PP_1551

0.510

PP_1559

0.448

Your Current Organism:

Pseudomonas putida KT2440

NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
PP_1551	PP_1552	Putative Phage replication protein O; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Putative Phage replication protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.789
PP_1551	PP_1553	Putative Phage replication protein O; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Homologs of previously reported genes of unknown function.	0.557
PP_1551	PP_1554	Putative Phage replication protein O; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Homologs of previously reported genes of unknown function.	0.575
PP_1551	PP_1555	Putative Phage replication protein O; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Putative Phage integrase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the 'phage' integrase family.	0.564
PP_1551	PP_1556	Putative Phage replication protein O; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Homologs of previously reported genes of unknown function.	0.513
PP_1551	PP_1557	Putative Phage replication protein O; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Homologs of previously reported genes of unknown function.	0.551
PP_1551	PP_1558	Putative Phage replication protein O; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Homologs of previously reported genes of unknown function.	0.510
PP_1552	PP_1551	Putative Phage replication protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Putative Phage replication protein O; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.789
PP_1552	PP_1553	Putative Phage replication protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Homologs of previously reported genes of unknown function.	0.773
PP_1552	PP_1554	Putative Phage replication protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Homologs of previously reported genes of unknown function.	0.786
PP_1552	PP_1555	Putative Phage replication protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Putative Phage integrase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the 'phage' integrase family.	0.779
PP_1552	PP_1556	Putative Phage replication protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Homologs of previously reported genes of unknown function.	0.741
PP_1552	PP_1557	Putative Phage replication protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Homologs of previously reported genes of unknown function.	0.737
PP_1552	PP_1558	Putative Phage replication protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Homologs of previously reported genes of unknown function.	0.721
PP_1552	PP_1559	Putative Phage replication protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	Holin.	0.435
PP_1553	PP_1551	Homologs of previously reported genes of unknown function.	Putative Phage replication protein O; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.557
PP_1553	PP_1552	Homologs of previously reported genes of unknown function.	Putative Phage replication protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.773
PP_1553	PP_1554	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.789
PP_1553	PP_1555	Homologs of previously reported genes of unknown function.	Putative Phage integrase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the 'phage' integrase family.	0.742
PP_1553	PP_1556	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.737