Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_1564Homologs of previously reported genes of unknown function. (54 aa)    
Predicted Functional Partners:
PP_1563
Putative Phage terminase, large subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.755
PP_1562
Putative Phage terminase, small subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.678
PP_1565
Phage portal protein, HK97 family.
       0.668
PP_1566
Peptidase U35.
       0.668
PP_1567
Capsid protein.
  
    0.617
PP_1568
Homologs of previously reported genes of unknown function.
  
    0.517
PP_1572
Homologs of previously reported genes of unknown function.
  
    0.517
PP_1571
Homologs of previously reported genes of unknown function.
  
    0.514
PP_1569
Homologs of previously reported genes of unknown function.
       0.509
PP_1570
Head-tail adaptor.
       0.509
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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