Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_1567Capsid protein. (414 aa)    
Predicted Functional Partners:
PP_1565
Phage portal protein, HK97 family.
 
 
 0.964
PP_1566
Peptidase U35.
 
  
 0.945
PP_1563
Putative Phage terminase, large subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.905
PP_1569
Homologs of previously reported genes of unknown function.
  
 
 0.859
PP_1570
Head-tail adaptor.
  
 
 0.854
PP_3879
Phage portal protein, HK97 family.
 
 
 
 0.845
PP_3882
Putative Phage terminase, small subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   
 0.815
PP_3883
Putative Phage holin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   
 0.812
PP_3881
Putative Phage terminase, large subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   
 0.784
nfrB
Bacteriophage N4 receptor, inner membrane subunit; Function of homologous gene experimentally demonstrated in an other organism; phenotype; Unknown function.
      
 0.744
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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