STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_1576Putative Immunity protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (107 aa)    
Predicted Functional Partners:
bamA-I
Outer membrane protein assembly factor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
      
 0.752
bamA-II
Outer membrane protein assembly factor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
      
 0.752
creA
Creatinase; Function experimentally demonstrated in the studied species; enzyme; Proteinfate : Degradation of proteins, peptides, and glycopeptides.
      
 0.746
clpV
Protein ClpV1; Belongs to the ClpA/ClpB family.
      
 0.744
cycA
D-alanine, beta-alanine, D-serine, glycine permease; Function of homologous gene experimentally demonstrated in an other organism; transporter; Biologicalprocesses : Circulate.
      
 0.738
hcpC-I
Hemolysin-coregulated protein; Function of strongly homologous gene; factor.
   
  
 0.732
hcpC-II
Hemolysin-coregulated protein; Function of strongly homologous gene; factor.
      
 0.731
cvpA
Membrane protein required for colicin V production; Function of homologous gene experimentally demonstrated in an other organism; membrane component; Cell envelope.
      
 0.676
PP_3066
Pyocin R2_PP, lytic enzyme.
   
  
 0.648
PP_1577
Phage tail tape meausure protein, lambda family.
  
    0.632
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.