STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_1577Phage tail tape meausure protein, lambda family. (813 aa)    
Predicted Functional Partners:
PP_1579
Homologs of previously reported genes of unknown function.
  
    0.942
PP_1573
Putative Major tail protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.863
PP_1578
Homologs of previously reported genes of unknown function.
  
    0.810
PP_1580
Homologs of previously reported genes of unknown function.
  
    0.798
PP_5475
Homologs of previously reported genes of unknown function; Unknown function.
       0.773
PP_3066
Pyocin R2_PP, lytic enzyme.
  
    0.710
PP_3040
Pyocin R2_PP, holin.
   
  
 0.669
PP_1576
Putative Immunity protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.632
PP_1565
Phage portal protein, HK97 family.
 
  
 0.618
PP_1541
Putative Methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.603
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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