Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_1584Homologs of previously reported genes of unknown function. (166 aa)    
Predicted Functional Partners:
PP_1563
Putative Phage terminase, large subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.975
PP_1583
Putative Structural protein P5; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.776
PP_1582
Homologs of previously reported genes of unknown function.
       0.682
PP_1581
BNR domain protein.
       0.663
PP_5476
Homologs of previously reported genes of unknown function; Unknown function.
       0.580
PP_1580
Homologs of previously reported genes of unknown function.
  
    0.484
PP_1579
Homologs of previously reported genes of unknown function.
  
    0.475
PP_1577
Phage tail tape meausure protein, lambda family.
       0.461
PP_1578
Homologs of previously reported genes of unknown function.
       0.451
PP_5475
Homologs of previously reported genes of unknown function; Unknown function.
       0.451
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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