Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_1666Homologs of previously reported genes of unknown function. (355 aa)    
Predicted Functional Partners:
PP_1663
Homologs of previously reported genes of unknown function.
 
    0.910
PP_1667
Putative Transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.872
hda
Regulator of DnaA that prevents premature reinitiation of DNA replication; Function of homologous gene experimentally demonstrated in an other organism; putative transporter; DNA metabolism; Belongs to the DnaA family. HdA subfamily.
 
     0.743
PP_4333
CheW domain protein.
  
     0.739
PP_0790
Inner membrane protein AmpE.
  
     0.734
dedD
Putative cell division protein; Function of homologous gene experimentally demonstrated in an other organism; cell process; Unknown function.
  
     0.714
algK
Alginate biosynthesis protein AlgK; May be involved in the polymerization of mannuronate to alginate.
  
     0.710
PP_1325
Putative lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; lipoprotein.
  
     0.706
purN
Phosphoribosylglycinamide formyltransferase 1; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
 
     0.706
PP_1126
Putative Hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.674
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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