Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_1692Homologs of previously reported genes of unknown function; Unknown function. (139 aa)    
Predicted Functional Partners:
PP_2323
Homologs of previously reported genes of unknown function.
   
  
 0.867
PP_1058
Homologs of previously reported genes of unknown function.
      
 0.865
PP_5152
Homologs of previously reported genes of unknown function.
      
 0.855
PP_0903
Homologs of previously reported genes of unknown function.
      
 0.819
PP_0900
PAP2 family protein.
      
 0.813
pagL-I
Lipid A 3-O-deacylase; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family.
      
 0.768
aprDA
Alkaline protease secretion transporter ATP-binding protein; Function experimentally demonstrated in the studied genus; transporter.
      
 0.768
rmuC
DNA recombination limiting inversions protein; Function of homologous gene experimentally demonstrated in an other organism; cell process; DNAmetabolism : DNA replication, recombination, and repair.
       0.683
PP_0904
InaA protein.
    
 0.675
oprI
Major outer membrane lipoprotein.
      
 0.654
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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