Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_1700Acyltransferase. (661 aa)    
Predicted Functional Partners:
fadD-I
long-chain-fatty-acid/CoA ligase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
 
 0.927
fadD-II
long-chain-fatty-acid/CoA ligase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 0.926
acs
Butyrate--CoA ligase; Function experimentally demonstrated in the studied genus; enzyme; Fatty acid and phospholipid metabolism.
  
 0.908
PP_4063
Putative Long-chain-fatty-acid-CoA ligase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 0.905
PP_0763
Medium-chain-fatty-acid CoA ligase.
  
 0.644
PP_1699
2-pyrone-4,6-dicarboxylic acid hydrolase; Function experimentally demonstrated in the studied species; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
       0.615
PP_3553
AMP-binding domain protein.
  
 0.600
PP_1698
Major facilitator family transporter.
       0.584
PP_1695
Putative Sodium-solute symporter/sensory box histidine kinase/response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.582
PP_2038
long-chain-fatty-acid--CoA ligase; Function of strongly homologous gene; enzyme; Fatty acid and phospholipid metabolism.
  
 0.571
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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