Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
sugETransporter; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins. (105 aa)    
Predicted Functional Partners:
PP_5276
Phospholipase D family protein.
     
 0.772
tctD
Transcriptional regulatory protein tctD.
      
 0.708
puuP
Putrescine permease; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins.
      
 0.651
pvdT
Pyoverdine efflux carrier and ATP binding protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
     
 0.638
rdgC
Recombination-associated protein RdgC; May be involved in recombination; Belongs to the RdgC family.
       0.587
emrE
Putative small multidrug resistance protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins.
 
  
0.561
mdeA
Methionine gamma-lyase; Function experimentally demonstrated in the studied strain; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
     
 0.526
lldP
L-lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
      
 0.503
PP_3247
Transporter, bile acid/Na+ symporter family.
       0.449
PP_3304
Multidrug resistance transporter, Bcr/CflA family.
  
   
 0.415
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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