STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_1708Oxidoreductase, short chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (252 aa)    
Predicted Functional Partners:
PP_1707
D-isomer specific 2-hydroxyacid dehydrogenase family protein.
 
     0.748
PP_1709
Fumarylacetoacetate hydrolase family protein.
  
    0.736
PP_2540
Oxidoreductase, short-chain dehydrogenase/reductase family.
 
    0.547
PP_3206
Homologs of previously reported genes of unknown function.
 
    0.529
PP_1711
Transcriptional regulator, AraC family.
 
     0.439
PP_1710
MFS transporter, phthalate permease family.
       0.413
PP_2600
Homologs of previously reported genes of unknown function.
 
    0.408
PP_0170
ABC transporter, periplasmic binding protein.
 
     0.404
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.