Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_1710MFS transporter, phthalate permease family. (446 aa)    
Predicted Functional Partners:
garD
Galactarate dehydratase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
 
  
 0.550
gudD
D-glucarate dehydratase / L-idarate epimerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.499
pcaK
4-hydroxybenzoate transporter; Function experimentally demonstrated in the studied species; transporter; Transport and binding proteins.
  
    0.478
PP_1709
Fumarylacetoacetate hydrolase family protein.
  
    0.445
PP_2834
Putative D-galactarate dehydratase/Altronate dehydratase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Energymetabolism : Sugars.
  
 0.437
PP_1707
D-isomer specific 2-hydroxyacid dehydrogenase family protein.
  
    0.413
PP_1708
Oxidoreductase, short chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.413
PP_1711
Transcriptional regulator, AraC family.
       0.408
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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