STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
PP_1718Putative diguanylate phosphodiesterase containing EAL domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity. (360 aa)    
Predicted Functional Partners:
PP_2557
Sensory box protein.
 
 0.984
PP_4405
Sensory box protein.
 
 0.963
TpbB
Diguanylate cyclase; Function experimentally demonstrated in the studied genus; enzyme; Regulatory functions.
  
 0.953
PP_0216
Putative sensory box/GGDEF family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Signal transduction.
 
 0.939
PP_3348
GGDEF domain protein.
  
 0.926
PP_0798
GGDEF domain protein.
  
 0.892
PP_2505
GAF domain/GGDEF domain protein.
  
 0.882
PP_2097
Sensory box protein.
 
 
 0.874
PP_3711
Diguanylate cyclase; Function of strongly homologous gene; enzyme.
 
 0.870
PP_1411
GGDEF domain protein.
  
 0.858
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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