STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_1728Homologs of previously reported genes of unknown function. (717 aa)    
Predicted Functional Partners:
mscMB
Mechanosensitive channel of miniconductance; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins.
      
 0.902
PP_5256
Cyclic nucleotide-binding protein.
 
  
 0.894
oprE
Outer-membrane porin E; Function experimentally demonstrated in the studied genus; transporter; Transportandbindingproteins : Porins.
      
 0.741
mscL
Large-conductance mechanosensitive channel; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.
     
 0.741
oprC
Outer membrane copper receptor OprC.
      
 0.656
oprI
Major outer membrane lipoprotein.
      
 0.653
PP_1729
Homologs of previously reported genes of unknown function.
       0.651
apeB
Probable M18 family aminopeptidase 2.
  
    0.603
PP_1353
Homologs of previously reported genes of unknown function.
      
0.554
oprG
Outer membrane protein OprG.
      
 0.546
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.