STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_1728Homologs of previously reported genes of unknown function. (717 aa)    
Predicted Functional Partners:
PP_5256
Cyclic nucleotide-binding protein.
 
  
 0.870
mscMB
Mechanosensitive channel of miniconductance; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins.
      
 0.865
oprE
Outer-membrane porin E; Function experimentally demonstrated in the studied genus; transporter; Transportandbindingproteins : Porins.
      
 0.675
PP_1729
Homologs of previously reported genes of unknown function.
       0.651
oprC
Outer membrane copper receptor OprC.
      
 0.647
mscL
Large-conductance mechanosensitive channel; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.
     
 0.637
oprI
Major outer membrane lipoprotein.
   
  
 0.635
apeB
Probable M18 family aminopeptidase 2.
  
    0.533
PP_3360
Homologs of previously reported genes of unknown function.
      
0.490
oprG
Outer membrane protein OprG.
   
  
 0.486
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.