STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_1737Homologs of previously reported genes of unknown function. (248 aa)    
Predicted Functional Partners:
PP_1738
Homologs of previously reported genes of unknown function.
    0.919
mlaD
Phospholipid ABC transporter binding protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins.
 
   
 0.803
PP_2702
Putative Porin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
 
 0.626
ttg2D
Toluene tolerance protein; Function of strongly homologous gene; regulator.
 
 
 
 0.601
PP_2662
Homologs of previously reported genes of unknown function.
 
 
 0.568
PP_1739
Homologs of previously reported genes of unknown function.
  
    0.482
mlaE
Phospholipid ABC transporter; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins.
 
  
 0.468
mreC
Cell shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
    0.428
mrdA-II
Transpeptidase (penicillin-binding protein 2); Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.
 
     0.414
lptD
LPS-assembly protein LptD; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
   
 0.400
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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