Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_1738Homologs of previously reported genes of unknown function. (432 aa)    
Predicted Functional Partners:
PP_1737
Homologs of previously reported genes of unknown function.
  
 0.979
vacJ
VacJ lipoprotein.
  
 0.778
PP_4911
Homologs of previously reported genes of unknown function.
  
     0.676
PP_4465
Putative Porin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.636
PP_5152
Homologs of previously reported genes of unknown function.
  
     0.613
PP_2662
Homologs of previously reported genes of unknown function.
 
 
 
 0.606
PP_1600
Skp-like protein.
  
   
 0.602
PP_0140
Homologs of previously reported genes of unknown function.
     
 0.595
lptC
Conserved exported protein of unknown function; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA.
 
     0.585
PP_0347
Homologs of previously reported genes of unknown function.
  
     0.572
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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