STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_1738Homologs of previously reported genes of unknown function. (432 aa)    
Predicted Functional Partners:
PP_1737
Homologs of previously reported genes of unknown function.
    0.919
PP_4911
Homologs of previously reported genes of unknown function.
  
     0.676
PP_4465
Putative Porin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.636
PP_2662
Homologs of previously reported genes of unknown function.
 
 
 
 0.624
PP_5152
Homologs of previously reported genes of unknown function.
  
     0.613
PP_1600
Skp-like protein.
  
   
 0.603
lptC
Conserved exported protein of unknown function; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA.
 
     0.587
PP_0347
Homologs of previously reported genes of unknown function.
  
     0.572
PP_1357
Homologs of previously reported genes of unknown function; Unknown function.
  
     0.567
PP_1503
Homologs of previously reported genes of unknown function.
  
   
 0.543
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.