STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_1778Lipopolysaccharide ABC export system, permease protein. (264 aa)    
Predicted Functional Partners:
PP_1779
Lipopolysaccharide ABC export system, ATP-binding protein.
 
 0.999
PP_1780
Putative mannosyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.967
PP_3126
Putative polysaccharide exported protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.842
PP_1776
Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
 
  
 0.809
cpsG
Phosphomannomutase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Sugars.
  
  
 0.793
wbpY
Glycosyl transferase WbpY.
 
  
 0.747
wbpZ
Glycosyl transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.735
PP_1792
Glycosyl transferase, group 2 family protein.
 
  
 0.701
rmd
Oxidoreductase Rmd.
 
  
 0.667
PP_3135
Putative Glycosyl transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.666
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.