Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_1779Lipopolysaccharide ABC export system, ATP-binding protein. (405 aa)    
Predicted Functional Partners:
PP_1778
Lipopolysaccharide ABC export system, permease protein.
 
 0.999
PP_1780
Putative mannosyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.968
wbpZ
Glycosyl transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 0.952
PP_0165
GGDEF domain protein.
   
  
 0.897
PP_3126
Putative polysaccharide exported protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.877
wbpY
Glycosyl transferase WbpY.
 
 0.871
yijP
Putative phosphoethanolamine transferase CptA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
      
 0.870
rmd
Oxidoreductase Rmd.
  
 0.867
dusB
tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily.
      
 0.863
PP_1776
Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
 
  
 0.809
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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