Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PP_1793Glycosyl transferase, group 2 family protein. (862 aa)    
Predicted Functional Partners:
PP_1792
Glycosyl transferase, group 2 family protein.
 
     0.945
PP_1794
Conserved hypothetical protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; 16517623, 6233695, 11688802, 11222281, 7585354.
 
 
   0.779
PP_3142
Putative Sugar transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.713
PP_1795
Homologs of previously reported genes of unknown function.
   
   0.684
PP_1790
Putative Acylneuraminate cytidylyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
     
 0.664
PP_1778
Lipopolysaccharide ABC export system, permease protein.
 
  
 0.653
PP_1789
Hydrolase, haloacid dehalogenase-like family.
       0.642
PP_1791
Putative Aldolase/synthase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.642
PP_1779
Lipopolysaccharide ABC export system, ATP-binding protein.
 
  
 0.617
PP_0500
dTDP-4-rhamnose reductase-related protein; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
 
  
 0.551
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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