Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_1794Conserved hypothetical protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; 16517623, 6233695, 11688802, 11222281, 7585354. (480 aa)    
Predicted Functional Partners:
PP_1841
Cytochrome c family protein.
  
   
 0.803
PP_1792
Glycosyl transferase, group 2 family protein.
 
   0.779
PP_1793
Glycosyl transferase, group 2 family protein.
 
 
   0.779
cyoD
Cytochrome bo terminal oxidase subunit IV; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Aerobic.
   
  
 0.744
PP_1795
Homologs of previously reported genes of unknown function.
  
    0.739
flgM
Negative regulator of flagellin synthesis FlgM.
    
 
 0.727
aprDA
Alkaline protease secretion transporter ATP-binding protein; Function experimentally demonstrated in the studied genus; transporter.
 
 
 0.723
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
  
 0.658
PP_4924
Serine protease, subtilase family.
 
  
 0.645
PP_1790
Putative Acylneuraminate cytidylyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.608
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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