Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_1795Homologs of previously reported genes of unknown function. (295 aa)    
Predicted Functional Partners:
PP_2634
Putative Cellulose synthase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
      
 0.892
PP_3138
VirK domain protein.
      
 0.740
PP_1794
Conserved hypothetical protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; 16517623, 6233695, 11688802, 11222281, 7585354.
  
    0.739
ygaU
Regulator of murein cross-linking; Function of homologous gene experimentally demonstrated in an other organism; regulator; Unknown function.
  
  
 0.713
PP_1792
Glycosyl transferase, group 2 family protein.
  
   0.696
PP_1793
Glycosyl transferase, group 2 family protein.
   
   0.684
PP_3135
Putative Glycosyl transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
 
 0.673
treSA
Trehalose synthase A; Function experimentally demonstrated in the studied genus; enzyme; Energymetabolism : Sugars.
     
 0.659
PP_1749
GNAT family acetyltransferase; Function experimentally demonstrated in the studied genus; enzyme; Central intermediary metabolism.
      
 0.655
PP_1790
Putative Acylneuraminate cytidylyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.579
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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