STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_1816Alcohol dehydrogenase, zinc-containing. (333 aa)    
Predicted Functional Partners:
PP_1817
Oxidoreductase, short-chain dehydrogenase/reductase family.
 
 
 0.758
PP_2437
Putative Acyl-CoA dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.630
PP_3925
Homologs of previously reported genes of unknown function.
 
    0.550
PP_1720
Alcohol dehydrogenase, zinc-containing.
 
  
 0.500
PP_2791
Aminoglycoside phosphotransferase.
 
    0.497
yeaE
Methylglyoxal reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Unknownfunction : Enzymes of unknown specificity.
   
 
 0.489
dkgB
2,5-diketo-D-gluconate reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Sugars.
   
 
 0.481
PP_2827
Alcohol dehydrogenase, zinc-containing.
 
  
 0.476
yqhD
Alcohol dehydrogenase, NAD(P)-dependent; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Central intermediary metabolism.
     
 0.471
PP_3926
Short-chain dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Biologicalprocesses : Scavenge (Catabolism).
  
 
 0.442
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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