Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_1853Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (312 aa)    
Predicted Functional Partners:
PP_2041
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.692
PP_2701
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.675
PP_0371
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.671
PP_4929
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.655
PP_4464
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.636
GbpR
Galactose-binding protein regulator; Function of strongly homologous gene; regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.635
PP_3660
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.604
PP_3179
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.591
PP_2194
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.574
PP_1852
Putative enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Fattyacidandphospholipidmetabolism : Biosynthesis.
  
    0.568
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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