STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
earPEF-P arginine 32 rhamnosyl-transferase; Function experimentally demonstrated in the studied genus; enzyme. (377 aa)    
Predicted Functional Partners:
efp
Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
 
 0.994
ldcC
Lysine decarboxylase; Function experimentally demonstrated in the studied genus; enzyme; Energymetabolism : Amino acids and amines.
  
     0.648
PP_1854
Homologs of previously reported genes of unknown function.
  
    0.606
PP_1855
Homologs of previously reported genes of unknown function.
       0.604
PP_1058
Homologs of previously reported genes of unknown function.
  
     0.501
PP_5469
Putative SAM-dependent methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.429
PP_4971
Putative Outer membrane-bound lytic murein transglycolase A; Murein-degrading enzyme. May play a role in recycling of muropeptides during cell elongation and/or cell division.
  
     0.422
PP_0886
Homologs of previously reported genes of unknown function.
  
     0.403
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.