Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ygiD4,5-DOPA-dioxygenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fattyacidandphospholipidmetabolism : Biosynthesis. (264 aa)    
Predicted Functional Partners:
estB
Carboxylesterase 2.
      0.885
PP_2564
Putative Quercetin 2,3-dioxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the pirin family.
 
  
 0.835
PP_3403
Putative Quercetin 2,3-dioxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the pirin family.
 
  
 0.791
PP_4177
Homologs of previously reported genes of unknown function; Belongs to the pirin family.
 
  
 0.765
benB
Benzoate 1,2-dioxygenase subunit beta; Function experimentally demonstrated in the studied species; enzyme; Energy metabolism.
     
 0.695
gqr
Glutathionyl-hydroquinone reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Unknownfunction : Enzymes of unknown specificity.
     
 0.651
yceJ
Putative cytochrome b561, iron-regulated; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier; Energymetabolism : Electron transport.
  
  
 0.610
tpm
Putative thiopurine S-methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the class I-like SAM-binding methyltransferase superfamily. TPMT family.
       0.592
quiA
Quinate dehydrogenase (quinone); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Fattyacidandphospholipidmetabolism : Degradation.
      
 0.592
catC
Muconolactone Delta-isomerase; Function experimentally demonstrated in the studied species; enzyme; Energy metabolism; Belongs to the muconolactone Delta-isomerase family.
     
 0.590
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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