STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_1880Outer membrane autotransporter. (730 aa)    
Predicted Functional Partners:
PP_1230
Homologs of previously reported genes of unknown function.
  
    0.673
PP_4234
Aldehyde oxidase and xanthine dehydrogenase.
  
     0.669
PP_1879
Homologs of previously reported genes of unknown function.
  
    0.652
PP_0867
FecA-like outer membrane receptor.
  
     0.610
PP_1882
Homologs of previously reported genes of unknown function.
 
    0.587
PP_3158
Homologs of previously reported genes of unknown function.
  
     0.578
PP_1449
Homologs of previously reported genes of unknown function.
  
  
 0.576
PP_3145
Homologs of previously reported genes of unknown function.
  
     0.571
PP_1890
Type 1 pili chaperone protein FimC.
  
  
 0.557
PP_2565
Putative helicase, UvrD/REP family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; DNA metabolism.
  
     0.556
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.