Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PP_1880Outer membrane autotransporter. (730 aa)    
Predicted Functional Partners:
PP_1230
Homologs of previously reported genes of unknown function.
  
     0.671
PP_4234
Aldehyde oxidase and xanthine dehydrogenase.
  
     0.669
PP_1879
Homologs of previously reported genes of unknown function.
       0.650
PP_0867
FecA-like outer membrane receptor.
  
     0.610
PP_1882
Homologs of previously reported genes of unknown function.
 
  
 0.592
PP_3158
Homologs of previously reported genes of unknown function.
  
     0.578
PP_1449
Homologs of previously reported genes of unknown function.
  
  
 0.576
PP_3145
Homologs of previously reported genes of unknown function.
  
     0.571
PP_1890
Type 1 pili chaperone protein FimC.
  
    0.567
PP_1887
Homologs of previously reported genes of unknown function.
 
  
 0.562
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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