Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_1888Fimbrial protein. (364 aa)    
Predicted Functional Partners:
fimD
Type 1 pili subunit FimD.
  
 
 0.957
PP_1890
Type 1 pili chaperone protein FimC.
  
 
 0.944
PP_2361
Putative chaperone protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
  
 
 0.868
PP_1450
Putative Activation/secretion protein, TPS family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.809
fimI
Type 1 pili subunit FimI.
  
  
 0.637
PP_2362
Putative usher protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
  
 
 0.630
PP_4924
Serine protease, subtilase family.
   
  
 0.506
PP_0993
Homologs of previously reported genes of unknown function.
   
    0.483
vgrG-III
Type 6 secretion system protein; Function of strongly homologous gene; regulator.
   
    0.419
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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