STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_1890Type 1 pili chaperone protein FimC. (259 aa)    
Predicted Functional Partners:
fimD
Type 1 pili subunit FimD.
 
 
 0.987
PP_1888
Fimbrial protein.
  
 
 0.949
fimI
Type 1 pili subunit FimI.
  
 
 0.906
PP_2362
Putative usher protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
 
 
 0.844
PP_1230
Homologs of previously reported genes of unknown function.
  
     0.741
PP_1450
Putative Activation/secretion protein, TPS family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.680
PP_1880
Outer membrane autotransporter.
  
  
 0.557
PP_2536
Glutathione S-transferase family protein.
  
    0.552
PP_4924
Serine protease, subtilase family.
   
    0.525
PP_1449
Homologs of previously reported genes of unknown function.
  
  
 0.520
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.