STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fimIType 1 pili subunit FimI. (179 aa)    
Predicted Functional Partners:
PP_1890
Type 1 pili chaperone protein FimC.
  
 
 0.906
fimD
Type 1 pili subunit FimD.
  
 
 0.891
PP_2361
Putative chaperone protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
  
 
 0.768
atpC
ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane.
      
 0.650
PP_1888
Fimbrial protein.
  
  
 0.606
PP_2362
Putative usher protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
  
 
 0.540
atpG
ATP synthase gamma chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
   
  
 0.497
atpB
ATP synthase subunit a; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.
      
 0.489
slyB
Outer membrane lipoprotein; Function of homologous gene experimentally demonstrated in an other organism; lipoprotein; Cellenvelope : Surface structures.
   
  
 0.459
lrp
DNA-binding transcriptional dual regulator, leucine-binding; Function of homologous gene experimentally demonstrated in an other organism; regulator; Aminoacidbiosynthesis : Pyruvate family.
      
 0.442
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.