Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yceGSeptation protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. (421 aa)    
Predicted Functional Partners:
pabC
4-amino-4-deoxychorismate lyase; Function experimentally demonstrated in the studied genus; enzyme; Biosynthesis of cofactors, prosthetic groups, and carriers.
 
  
 0.988
holB
DNA polymerase III subunit delta'.
 
  
 0.936
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
      0.917
ltg
Lytic transglycosylase.
  
  
 0.899
PP_2130
Putative Soluble lytic transglycosylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.895
ycfH
tRNA D-aminoacylase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Biologicalprocesses : Maintain.
    
 0.863
PP_1964
Putative dGMP, dTMP, dhydroxyCMP kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
     
 0.859
PP_0594
Transcriptional regulator, TetR family.
      
 0.851
PP_4295
TetR family transcriptional regulator.
      
 0.851
ctpA
Carboxy-terminal-processing protease; Belongs to the peptidase S41A family.
 
   
 0.836
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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