STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_1925Putative Monooxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (360 aa)    
Predicted Functional Partners:
PP_1924
Putative Phosphinothricin N-acetyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.773
PP_1927
Putative Arsenical resistance protein ArsH; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.710
PP_1926
Putative phosphotyrosine-protein phosphatase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.703
PP_1928
Arsenate reductase; Function of strongly homologous gene; enzyme; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
       0.697
arsB-I
Arsenite/antimonite transporter; Involved in arsenical resistance. Thought to form the channel of an arsenite pump; Belongs to the ArsB family.
  
    0.686
arsR-I
Arsenic resistance transcriptional regulator; Binds arsenite and regulates the expression of arsenic efflux pumps. In vitro, also binds antimony and bismuth, but not arsenate.
  
  
 0.629
PP_3572
Homologs of previously reported genes of unknown function.
 
    0.499
atpA
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
   
   0.475
atpG
ATP synthase gamma chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
   
   0.446
PP_1163
Oxidoreductase, FAD-binding.
 
  
 0.431
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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