STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_1936Homologs of previously reported genes of unknown function. (978 aa)    
Predicted Functional Partners:
PP_5491
Conserved protein of unknown function with SEC-C motif domain; Homologs of previously reported genes of unknown function; Unknown function.
       0.773
PP_5492
Homologs of previously reported genes of unknown function; Unknown function.
       0.773
PP_3694
Homologs of previously reported genes of unknown function.
 
     0.634
PP_1937
Putative helicase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity.
  
    0.567
PP_3204
Homologs of previously reported genes of unknown function.
  
     0.499
PP_3197
Glyoxalase family protein.
  
    0.478
PP_3195
Homologs of previously reported genes of unknown function.
  
    0.463
yfiP
Conserved protein; Homologs of previously reported genes of unknown function; Unknown function.
  
     0.436
PP_1166
Putative permease of the drug/metabolite transporter (DMT) superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins.
  
    0.407
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.