Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_1947Homologs of previously reported genes of unknown function. (329 aa)    
Predicted Functional Partners:
PP_1948
Benzaldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
    0.759
PP_1949
Oxidoreductase, GMC family.
  
    0.702
PP_1950
Homologs of previously reported genes of unknown function; Belongs to the cytochrome P450 family.
  
    0.494
nicX
2,5-dihydroxypyridine 5,6-dioxygenase; Catalyzes the dioxygenolytic ring cleavage of 2,5- dihydroxypyridine between carbons 5 and 6 generating N-formylmaleamate in the aerobic nicotinate degradation pathway.
  
     0.486
PP_1946
Oxidoreductase, short chain dehydrogenase/reductase family.
  
    0.481
PP_1944
Putative Aminomethyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the GcvT family.
 
     0.431
PP_1951
Oxidoreductase, short chain dehydrogenase/reductase family.
  
    0.423
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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