STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_1949Oxidoreductase, GMC family. (550 aa)    
Predicted Functional Partners:
PP_0057
Major facilitator family transporter; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
  
 0.860
PP_2049
Alcohol dehydrogenase, iron-containing.
   
  
 0.835
iorA-II
Isoquinoline 1-oxidoreductase subunit alpha; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
  
 0.746
adhB
Alcohol dehydrogenase cytochrome c subunit.
  
 
 0.731
PP_1948
Benzaldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
  
 0.726
hbdH
3-hydroxybutyrate dehydrogenase; Function experimentally demonstrated in the studied species; enzyme; Energy metabolism; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      
 0.705
PP_1947
Homologs of previously reported genes of unknown function.
  
    0.703
amaB
L-piperidine-6-carboxylate dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Amino acids and amines; Belongs to the aldehyde dehydrogenase family.
 
  
 0.667
PP_1950
Homologs of previously reported genes of unknown function; Belongs to the cytochrome P450 family.
  
  
 0.569
betI
Choline-responsive transcriptional repressor BetI; Repressor involved in choline regulation of the bet genes.
  
 0.546
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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