STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_1952Metallo-beta-lactamase family protein. (315 aa)    
Predicted Functional Partners:
PP_1951
Oxidoreductase, short chain dehydrogenase/reductase family.
  
   0.597
PP_1953
Oxidoreductase, short chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
   0.537
PP_1950
Homologs of previously reported genes of unknown function; Belongs to the cytochrome P450 family.
     
 0.500
PP_1954
Homologs of previously reported genes of unknown function.
     
 0.437
PP_1942
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
    0.407
PP_2108
Homologs of previously reported genes of unknown function.
  
    0.407
PP_5455
Homologs of previously reported genes of unknown function; Unknown function.
  
    0.407
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.