Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_1960Homologs of previously reported genes of unknown function. (440 aa)    
Predicted Functional Partners:
PP_1962
Site-specific recombinase, phage integrase family.
     
 0.974
PP_1964
Putative dGMP, dTMP, dhydroxyCMP kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
     
 0.940
PP_5490
Site-specific DNA recombinase; Function of strongly homologous gene; extrachromosomal origin; Mobileandextrachromosomalelementfunctions : Prophage functions.
  
  
 0.873
PP_1931
Homologs of previously reported genes of unknown function.
      
 0.867
PP_1961
Homologs of previously reported genes of unknown function.
       0.810
xerC
Tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
  
 0.770
holB
DNA polymerase III subunit delta'.
     
 0.768
PP_1963
Homologs of previously reported genes of unknown function.
  
    0.644
PP_3363
Putative thymidylate kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Purines, pyrimidines, nucleosides, and nucleotides.
     
 0.553
yceG
Septation protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.
     
 0.536
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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