Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_1971Homologs of previously reported genes of unknown function. (192 aa)    
Predicted Functional Partners:
PP_1970
Putative Lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.880
PP_1968
TetR family transcriptional regulator.
       0.677
PP_1969
Putative Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
       0.601
nudL
Putative NUDIX hydrolase with low 3-phosphohydroxypyruvate phosphatase activity; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme; Biologicalprocesses : Maintain.
      0.533
PP_4181
Homologs of previously reported genes of unknown function.
  
     0.523
PP_4587
Homologs of previously reported genes of unknown function; Unknown function; Belongs to the UPF0260 family.
  
     0.491
yigI
Homologs of previously reported genes of unknown function.
  
     0.479
holB
DNA polymerase III subunit delta'.
 
     0.472
PP_4183
Homologs of previously reported genes of unknown function.
  
    0.400
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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