STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_1980Homologs of previously reported genes of unknown function. (144 aa)    
Predicted Functional Partners:
dusC
tRNA-dihydrouridine synthase C; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U16 in tRNAs. Belongs to the Dus family. DusC subfamily.
  
    0.793
ibpA
Small heat shock protein IbpA; Function of homologous gene experimentally demonstrated in an other organism; factor; Cellularprocesses : Adaptations to atypical conditions; Belongs to the small heat shock protein (HSP20) family.
       0.642
PP_1979
Putative Hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.635
PP_4545
beta-ketodecanoyl-(Acyl-carrier-protein) synthase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme; Fatty acid and phospholipid metabolism.
 
 
 0.623
edd
Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
  
  
 0.528
sprT
Conserved protein of unknown function, SprT family; Homologs of previously reported genes of unknown function; Unknown function; Belongs to the SprT family.
 
     0.511
PP_1978
Transcriptional regulator, TetR family.
       0.494
ldcC
Lysine decarboxylase; Function experimentally demonstrated in the studied genus; enzyme; Energymetabolism : Amino acids and amines.
     
 0.489
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 
 0.479
PP_2308
Putative Acyl-CoA thioesterase II; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   
 0.469
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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