STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_1983PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase; Function of strongly homologous gene; regulator; Regulatory functions. (1098 aa)    
Predicted Functional Partners:
PP_1154
Sensory box protein.
 
 
0.816
PP_3413
Sensor histidine kinase/response regulator.
 
 
 0.795
yegE
Diguanylate cyclase with phosphodiesterase domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Proteinfate : Protein modification and repair.
 
 
0.770
PP_0672
Sensory box protein.
 
 
0.757
PP_1695
Putative Sodium-solute symporter/sensory box histidine kinase/response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.757
PP_3711
Diguanylate cyclase; Function of strongly homologous gene; enzyme.
 
 
0.755
PP_2100
Two-component sensor protein; Function of homologous gene experimentally demonstrated in an other organism; receptor.
 
 
 0.737
PP_3761
Sensor histidine kinase/response regulator.
  
 
 0.736
gacS
Sensor protein GacS.
 
 
 0.717
PP_0165
GGDEF domain protein.
 
 
0.678
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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