STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_1984Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (292 aa)    
Predicted Functional Partners:
PP_3143
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.670
PP_4522
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.637
leuC
3-isopropylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
  
    0.630
leuD
3-isopropylmalate dehydratase small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
  
  
 0.625
PP_5375
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.622
PP_1983
PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase; Function of strongly homologous gene; regulator; Regulatory functions.
  
    0.599
PP_4539
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.591
PP_1987
Methlytransferase, UbiE/COQ5 family.
  
    0.482
trpI
HTH-type transcriptional regulator TrpI; Belongs to the LysR transcriptional regulatory family.
  
     0.478
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
 
    0.463
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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