STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fimVPutative motility protein fimV; Function experimentally demonstrated in the studied genus; membrane component; Cellularprocesses : Chemotaxis and motility. (911 aa)    
Predicted Functional Partners:
pilN
Type IV pili biogenesis protein PilN.
  
  
 0.883
truA
tRNA pseudouridine (38-40)synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.775
PP_4819
Homologs of previously reported genes of unknown function.
  
     0.767
PP_4994
Homologs of previously reported genes of unknown function.
  
     0.767
dedD
Putative cell division protein; Function of homologous gene experimentally demonstrated in an other organism; cell process; Unknown function.
 
     0.765
PP_5311
Putative signal transduction protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Signal transduction.
  
    0.744
PP_5202
Putative cell division protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.
  
    0.733
pilF
Type IV pili biogenesis protein PilF.
  
  
 0.723
PP_0788
Homologs of previously reported genes of unknown function; Unknown function.
  
    0.713
PP_1898
MotA/TolQ/ExbB proton channel family protein.
  
     0.706
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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