PP_2013 protein (Pseudomonas putida KT2440) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PP_2013

Homologs of previously reported genes of unknown function. (323 aa)

Predicted Functional Partners:

PP_2014

0.958

PP_2015

0.892

ppnK

0.870

PP_2016

0.853

pepN

0.838

eutC

0.819

PP_2810

0.766

potA

0.744

PP_2011

0.711

PP_0097

0.710

Your Current Organism:

Pseudomonas putida KT2440

NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PP_0097	PP_2013	PP_0097	PP_2013	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.710
PP_0097	PP_2014	PP_0097	PP_2014	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.658
PP_0097	PP_2015	PP_0097	PP_2015	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.748
PP_2011	PP_2013	PP_2011	PP_2013	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.711
PP_2011	PP_2014	PP_2011	PP_2014	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.655
PP_2011	PP_2015	PP_2011	PP_2015	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.755
PP_2011	PP_2016	PP_2011	PP_2016	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.737
PP_2011	pepN	PP_2011	PP_2017	Homologs of previously reported genes of unknown function.	Function of homologous gene experimentally demonstrated in an other organism; enzyme; Proteinfate : Degradation of proteins, peptides, and glycopeptides.	0.615
PP_2011	ppnK	PP_2011	PP_2012	Homologs of previously reported genes of unknown function.	Probable inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.	0.700
PP_2013	PP_0097	PP_2013	PP_0097	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.710
PP_2013	PP_2011	PP_2013	PP_2011	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.711
PP_2013	PP_2014	PP_2013	PP_2014	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.958
PP_2013	PP_2015	PP_2013	PP_2015	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.892
PP_2013	PP_2016	PP_2013	PP_2016	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.853
PP_2013	PP_2810	PP_2013	PP_2810	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.766
PP_2013	eutC	PP_2013	PP_0542	Homologs of previously reported genes of unknown function.	Ethanolamine ammonia-lyase, beta-subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Amino acids and amines; Belongs to the EutC family.	0.819
PP_2013	pepN	PP_2013	PP_2017	Homologs of previously reported genes of unknown function.	Function of homologous gene experimentally demonstrated in an other organism; enzyme; Proteinfate : Degradation of proteins, peptides, and glycopeptides.	0.838
PP_2013	potA	PP_2013	PP_0411	Homologs of previously reported genes of unknown function.	Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.744
PP_2013	ppnK	PP_2013	PP_2012	Homologs of previously reported genes of unknown function.	Probable inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.	0.870
PP_2014	PP_0097	PP_2014	PP_0097	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.658