STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2027Homologs of previously reported genes of unknown function. (543 aa)    
Predicted Functional Partners:
PP_2028
Conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat; Homologs of previously reported genes of unknown function; Unknown function.
 
 
 0.973
PP_2031
Homologs of previously reported genes of unknown function.
 
  
 0.973
PP_2029
Von Willebrand factor type A domain protein.
 
   
 0.958
PP_2030
Homologs of previously reported genes of unknown function.
 
   
 0.957
PP_2032
Putative ATPase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.953
PP_0941
Putative ribosome associated protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Transport and binding proteins; Belongs to the UPF0307 family.
  
     0.497
cmoB
tRNA (mo5U34)-methyltransferase; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs.
 
     0.488
PP_2033
Homologs of previously reported genes of unknown function.
  
    0.474
fliI
Flagellum-specific ATP synthase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : ATP-proton motive force interconversion.
  
 
 0.455
PP_0891
Homologs of previously reported genes of unknown function; Belongs to the UPF0312 family.
  
    0.434
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.