STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_2027Homologs of previously reported genes of unknown function. (543 aa)    
Predicted Functional Partners:
PP_2028
Conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat; Homologs of previously reported genes of unknown function; Unknown function.
 
 
 0.983
PP_2031
Homologs of previously reported genes of unknown function.
 
  
 0.983
PP_2029
Von Willebrand factor type A domain protein.
 
   
 0.972
PP_2030
Homologs of previously reported genes of unknown function.
 
   
 0.969
PP_2032
Putative ATPase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.967
PP_2023
Glutathione S-transferase family protein.
 
    0.564
PP_0941
Putative ribosome associated protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Transport and binding proteins; Belongs to the UPF0307 family.
  
     0.497
gdhB
NAD-specific glutamate dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Amino acids and amines.
  
    0.492
sbcC
Exonuclease SbcC.
       0.488
sbcD
Exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
       0.488
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.