Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_2066Transcriptional regulator, GntR family. (254 aa)    
Predicted Functional Partners:
PP_1697
Transcriptional regulator, GntR family; Function of strongly homologous gene; regulator; Transcription.
  
   
 0.743
PP_4759
Transcriptional regulator, GntR family; Function of strongly homologous gene; regulator; Regulatory functions.
  
  
 0.654
PP_5034
Uncharacterized 21.2 kDa protein in hutC 3'region.
  
  
 0.651
hutC
Histidine utilization repressor.
  
     0.638
PP_2070
Transcriptional regulator, AraC family.
  
  
 0.625
PP_2067
Putative EmrB/QacA family drug resistance transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the major facilitator superfamily.
       0.608
PP_2068
Putative Multidrug efflux MFS membrane fusion protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.608
PP_3603
Transcriptional regulator, GntR family.
  
  
 0.592
glcC
Transcriptional dual regulator GlcC-Glycolate; Function of homologous gene experimentally demonstrated in an other organism; regulator; Energy metabolism.
  
  
 0.584
PP_0969
Transcriptional regulator, GntR family.
  
  
 0.575
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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